BLASTN 2.2.18 Mar-02-2008
Reference: Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,  Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),  "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig176
         (1248 letters)
Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
         1 sequences; 430597 total letters
Searching................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
gi|57013877|ref|NC_006581.1| Nicotiana tabacum mitochondrion ... 2282.2    0.0

>ref|NC_006581.1| Nicotiana tabacum mitochondrion, complete genome 

 Length = 430597


Score = 2282.18 bits (1151.0), Expect = 0.0
Identities = 1221/1248 (98%)
Strand = Plus/Plus

Query: 1      GAGTGGGAGAAAGGGGACGCATGAGCGTTGGATAATGGAAAGAAGGTAGAATTGCTCGGG 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111306 GAGTGGGAGAAAGGGGACGCATGAGCGTTGGATAATGGAAAGAAGGTAGAATTGCTCGGG 111365

Query: 61     ACCCCTAGTGATCGATTCTTTTTCTTTTATATAGGTAGGGTTGGGCAGCGACTCTACTCC 120
              |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111366 ACC--TAGTGATCGATTCTTTTTCTTTTATATAGGTAGGGTTGGGCAGCGACTCTACTCC 111423

Query: 121    TTGAAGTGAAGAATCGAAAGTCGTCGTTCGTTAGACAAGGCCCACGTGCTGTGCATCTCA 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 111424 TTGAAGTGAAGAATCGAAAGTCGTCGTTCGTTAGACAAGGCCCACGTGCTGTGCATCTCT 111483

Query: 181    GGTGTTCTGCTCGTGGGGAGAGGGATGCGGGAAAGTGGGGTCCTCTCACCTGTGCTCACT 240
              ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 111484 GGTGTTCTGCTCGTGGGGAGAGGAATGCGGGAAAGTGGGGTCCTCTCACCTGTGCTCACT 111543

Query: 241    TCCGTTTTAGAAGTCAGATTGGATTTCCAATTGGTGCTCAACAGAAGGGTTCCAAACCTC 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 111544 TCCGTTTTAGAAGTCAGATTGGATTTCCAATTGGTGCTCAACAGAAGGGTGGAAAACCTC 111603

Query: 301    TGAAAGGCGAGGCAGATTTAACGCTACGCCCTTCCCTTAGCGCCTCCCTCTAGGCGGGGC 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111604 TGAAAGGCGAGGCAGATTTAACGCTACGCCCTTCCCTTAGCGCCTCCCTCTAGGCGGGGC 111663

Query: 361    TCACAACCAAAGGATGCACGGGGTGAAGTTGCCACCATGAACTAAGGATTGGAAGGGTTG 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111664 TCACAACCAAAGGATGCACGGGGTGAAGTTGCCACCATGAACTAAGGATTGGAAGGGTTG 111723

Query: 421    AGGATAGAGTTTCTTTTTCATTTCCAGGGTAGTTGGCAAGAGCTATAGCAGCTTACGATG 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111724 AGGATAGAGTTTCTTTTTCATTTCCAGGGTAGTTGGCAAGAGCTATAGCAGCTTACGATG 111783

Query: 481    CAGTTGATTCGGAAACATACGCCAGGGCGGTTGGGTGGGGAGTCAGATCAGGCCAACGGT 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111784 CAGTTGATTCGGAAACATACGCCAGGGCGGTTGGGTGGGGAGTCAGATCAGGCCAACGGT 111843

Query: 541    CCTGCTCCGCTTTATACTAAGAGAGTTTGGTTGGGTCTGACTCCGTTATAGGGCTAGTAC 600
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111844 CCTGCTCCGCTTTATACTAAGAGAGTGTGGTTGGGTCTGACTCCGTTATAGGGCTAGTAC 111903

Query: 601    GCCGAGCAGCTTCGAATTCTGCTGTGCCGGTGCACAAAGCAAGCACACAAGGACTGCGTA 660
              |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 111904 GCCGAGCAGCTTCGAATTCTGCTGTGCCGGTGCACAAAGCAAGCACACAACGACTGCGTA 111963

Query: 661    AATCTTTGGTCTGTCTATCATTGCCCATGTTGGGCTGACTCCNNNNNNNAGGCAAGAAGA 720
              ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 111964 AATCTTTGGTCTGTCTATCATTGCCCATGTTGGGCTGACTCCTTTTTTTAGGCAAGAAGA 112023

Query: 721    CCACTAGTTGAATTATTAAACTATTAAGACTAACTGAAAAAAGGGTACTACTCTTCTTCC 780
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112024 CCACTAGTTGAATTATTAAACTATTAAGACTAACTGAAAAAAGGGTACTACTCTTCTTCC 112083

Query: 781    TCCACTACTGATATTGACTGACCTGTTGATAGGATAGCAGGGAAAGTTGAGAGTATATCC 840
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112084 TCCACTACTGATATTGACTGACCTGTTGATAGGATAGCAGGGAAAGTTGAGAGTATATCC 112143

Query: 841    GGAGAAAGNNNNNNNCCTTTTCAGGATGAGACTACGAACCCTAATGGAGCCAATGAGAAA 900
              ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112144 GGAGAAAGAAAAAAACCTTTTCAGGATGAGACTACGAACCCTAATGGAGCCAATGAGAAA 112203

Query: 901    GCAGTTGCAGGCCAGTGTAGGCTTGCTCCGCACAGGTTACATCTGGGCCTTATATTGATA 960
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112204 GCAGTTGCAGGCCAGTGTAGGCTTGCTCCGCACAGGTTACATCTGGGCCTTATATTGATA 112263

Query: 961    TTCTTTTCAATTCATTTGGAAATTTCTTCGGTCCGGGGTACCGCGCAATCCGTTTAGATC 1020
              |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 112264 TTCTTTTCAATTCATTTTTCAATTTCTTCGGTCCGGGGTACCGCGCAATCCGTTTAGATC 112323

Query: 1021   TATTTCAGTTGCCAATGAAATGGAATACGGGGGACTCTCCGTCTAAGTGGTTAATCCGAC 1080
              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 112324 TATTTCAGTTGCCAATGAAATGGAATACGGGGAACTCTCCGTCTAAGTGGTTAATCCGAC 112383

Query: 1081   GAGTCAATTCTCAATGCGATGCATCCGTGAAATGGGACGGAGATCTGCCCGAACTTAGTC 1140
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112384 GAGTCAATTCTCAATGCGATGCATCCGTGAAATGGGACGGAGATCTGCCCGAACTTAGTC 112443

Query: 1141   CAGTCCTATTAAAGATGGGGGCGAATCAAGCAACTCTTATAGATAGATGGGATAGGAAGG 1200
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112444 CAGTCCTATTAAAGATGGGGGCGAATCAAGCAACTCTTATAGATAGATGGGATAGGAAGG 112503

Query: 1201   AAGAACCACTGATAGCATTTGCAGCTGCTTCTTTCCGATCGATATACA 1248
              ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112504 AAGAACCACTGATAGCATTTGCAGCTGCTTCTTTCCGATCGATATACA 112553



Score = 135.293 bits (68.0), Expect = 9.94901e-33
Identities = 86/92 (93%)
Strand = Plus/Minus

Query: 702    GGAGTCAGCCCAACATGGGCAATGATAGACAGACCAAAGATTTACGCAGTCCTTGTGTGC 643
              |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 158870 GGAGTCAGCCCAACATGGACAATGATAGGCAGACCAAAGATTTACGCAGTCGTTGCGTGC 158929

Query: 642    TTGCTTTGTGCACCGGCACAGCAGAATTCGAA 611
              |||||||| ||||||||| |||||||||||||
Sbjct: 158930 TTGCTTTGCGCACCGGCATAGCAGAATTCGAA 158961



Score = 57.9812 bits (29.0), Expect = 1.86618e-09
Identities = 29/29 (100%)
Strand = Plus/Minus

Query: 813    CCTATCAACAGGTCAGTCAATATCAGTAG 785
              |||||||||||||||||||||||||||||
Sbjct: 158824 CCTATCAACAGGTCAGTCAATATCAGTAG 158852


  Database: /home/vicky/BKPVICKY/BLASTdb/tabaco.fasta
  Number of letters in database: 430597
  Number of sequences in database:  1

Lambda     K      H
    1.37    0.711     1.31

Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Length of database: 430597